PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_20140_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 120aa    MW: 14014.9 Da    PI: 9.2461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_20140_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13495190
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEE.EEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWe.vkliyrkksgr..yvltkGWkeFvkangLkegDfv 80
                                f+k lt  dv k+  + +p +f+ +h  +++  +++t  + d sg++We + + +rk+++    v++k W ++v++++L+ gD +
  Cotton_A_20140_BGI-A2_v1.0  4 FEKYLTEVDVKKQ--VAIPSDFV-QHlpDYEGGRTITFPVHDVSGKVWEnFGYYIRKGDDYpkPVFQKDWHKYVRDKRLRPGDKI 85
                                7888877777776..8*******.555955556789999*********8466644666655889********************* PP

                                EEEE-SSSEE CS
                          B3 81 vFkldgrsef 90
                                +F+++++ + 
  Cotton_A_20140_BGI-A2_v1.0 86 IFRVERNGDN 95
                                ***9887443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-142102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-152100IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-16288No hitNo description
PfamPF023621.1E-94100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MPSFEKYLTE VDVKKQVAIP SDFVQHLPDY EGGRTITFPV HDVSGKVWEN FGYYIRKGDD  60
YPKPVFQKDW HKYVRDKRLR PGDKIIFRVE RNGDNGATIY TIAAQKKIEI LGSTIWSSEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468654.11e-73PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0D2M7D21e-73A0A0D2M7D2_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-06ethylene response DNA binding factor 3